List of ELIXIR-IT Service Delivery Plan services under responsibility of the Padova Unit.

  • APICURON

    DATABASE PORTAL

    APICURON is an open resource that tracks and credits the work of biocurators across multiple participating knowledgebases.
    Biological databases

  • Database of protein disorder (DisProt)

    DATABASE PORTAL, WEB API, WEB APPLICATION

    Database of protein disorder. It is a community resource annotating protein sequences for intrinsically disordered regions from the literature.
    Protein disordered structure

  • MobiDB

    DATABASE PORTAL, WEB API, WEB APPLICATION

    Database of protein disorder and mobility annotations.
    Protein disordered structure, Protein structure analysis

  • RepeatsDB

    DATABASE PORTAL, WEB API, WEB APPLICATION

    Database of annotated tandem repeat protein structures.
    Protein structure analysis, Sequence composition, complexity and repeats

  • Protein Ensemble Database

    DATABASE PORTAL, WEB API, WEB APPLICATION

    The Protein Ensemble Database (PED) is an open access database for the deposition of structural ensembles including intrinsically disordered proteins.
    Protein disordered structure, Protein structure analysis

  • IDP Ontology

    WEB APPLICATION

    IDP Ontology used to describe disordered regions in intrinsically disordered proteins.
    Other

  • DOME

    WEB APPLICATION

    DOME-ML (or simply DOME) is a set of community-wide guidelines, recommendations and checklists aiming to help establish standards of supervised machine learning validation in biology.
    Machine learning

  • ESpritz

    WEB APPLICATION

    Efficient disorder prediction tool.
    Structure analysis

  • INGA

    WEB APPLICATION, COMMAND-LINE TOOL

    Interaction Network GO Annotator protein function predictor.
    Function analysis

  • RING

    WEB APPLICATION, COMMAND-LINE TOOL

    Residue interaction network generation method for Cytoscape.
    Protein structure analysis

  • PASTA

    WEB APPLICATION

    A web server predictor for amyloid aggregation propensity from protein sequences.
    Protein interactions, Sequence analysis

  • MobiDB-lite

    LIBRARY

    MobiDB-lite is an optimized method for highly specific predictions of long intrinsically disordered regions.
    Protein sites, features and motifs

  • TypeScript Feature Viewer

    LIBRARY

    Feature-Viewer is a JavaScript visualization tool to display the features covering your sequence of DNA, protein, or others.
    Imaging, Mapping, Protein modifications, Protein sites, features and motifs, Sequencing